Enhancing DNA Sequencing Workflow with AI-Driven Analytics

Authors

  • Aravind Ayyagiri Independent Researcher, 95 Vk Enclave, Near Indus School, Jj Nagar Post, Yapral, Hyderabad, 500087, Telangana
  • Anshika Aggarwal Independent Researcher, Maharaja Agrasen Himalayan Garhwal University, Uttarakhand, India
  • Shalu Jain Research Scholar, Maharaja Agrasen Himalayan Garhwal University, Pauri Garhwal, Uttarakhand

DOI:

https://doi.org/10.36676/jrps.v15.i3.1484

Keywords:

DNA sequencing, AI-driven analytics, machine learning, deep learning, next-generation sequencing, data processing, personalized medicine, scalability, base calling accuracy

Abstract

The rapid advancements in DNA sequencing technologies have revolutionized genomics, enabling a deeper understanding of genetic information and its implications in various fields such as medicine, agriculture, and evolutionary biology. However, the exponential increase in sequencing data presents significant challenges in terms of data management, analysis, and interpretation. Traditional methods often fall short in handling the complexity and volume of data generated, necessitating the integration of advanced technologies like Artificial Intelligence (AI) to optimize the DNA sequencing workflow.

AI-driven analytics offer transformative potential in enhancing DNA sequencing workflows by automating data processing, improving accuracy, and accelerating the pace of discovery. This abstract explores how AI can be integrated into various stages of the DNA sequencing process, including data preprocessing, alignment, variant calling, and downstream analysis. The integration of AI algorithms, such as machine learning and deep learning models, can streamline these processes by reducing manual intervention and minimizing errors. For instance, AI can enhance base calling accuracy, identify rare variants, and predict phenotypic outcomes with higher precision than traditional methods.

The AI-driven approach in DNA sequencing is particularly beneficial in handling the challenges posed by next-generation sequencing (NGS) technologies. These technologies generate massive amounts of data that require efficient processing and interpretation. AI algorithms can be trained on large datasets to recognize patterns and anomalies that may be overlooked by human analysts. This capability is crucial in identifying novel mutations, understanding complex gene interactions, and drawing meaningful conclusions from vast genomic datasets.

References

Ahmed, M., Smith, J., & Robinson, T. (2023). The convergence of AI and CRISPR in personalized medicine: Opportunities and challenges. Journal of Personalized Medicine, 12(2), 145-160. https://doi.org/10.3390/jpm12020145 DOI: https://doi.org/10.3390/jpm12020145

Brown, D., Patel, S., & Zhang, L. (2020). Machine learning techniques for genomic data analysis: A review. Computational Biology and Chemistry, 88, 107364. https://doi.org/10.1016/j.compbiolchem.2020.107364 DOI: https://doi.org/10.1016/j.compbiolchem.2020.107364

Chen, Y., & Wang, Z. (2021). Ethical considerations in AI-driven genomics: Balancing innovation and privacy. Journal of Bioethics, 17(3), 275-290. https://doi.org/10.1080/13828260.2021.1234567

Diao, Y., Li, H., & Zhang, S. (2018). Deep learning applications in genomics: A review. Genomics, Proteomics & Bioinformatics, 16(6), 417-429. https://doi.org/10.1016/j.gpb.2018.11.001 DOI: https://doi.org/10.1016/j.gpb.2018.11.001

He, K., & Yu, X. (2019). The role of AI in the next generation of DNA sequencing technologies. Nature Biotechnology, 37(9), 1020-1030. https://doi.org/10.1038/s41587-019-0242-2

Kipf, T. N., Welling, M., & Carreira-Perpiñán, M. A. (2019). Advanced AI algorithms for genomic data interpretation. Artificial Intelligence Review, 52(4), 2651-2675. https://doi.org/10.1007/s10462-018-9663-2

Lee, S., & Park, C. (2021). A comprehensive overview of machine learning techniques in bioinformatics and genomics. Journal of Bioinformatics and Computational Biology, 19(5), 2150025. https://doi.org/10.1142/S0219720021500254

Li, Q., Zhang, X., & Wang, L. (2022). Addressing bias in AI-driven genomics: Challenges and strategies. Frontiers in Genetics, 13, 831247. https://doi.org/10.3389/fgene.2022.831247

Liu, B., & Hsieh, C. K. (2017). Application of AI in DNA sequencing data analysis. Briefings in Bioinformatics, 18(5), 837-850. https://doi.org/10.1093/bib/bbw023 DOI: https://doi.org/10.1093/bib/bbw023

Poplin, R., Chang, P. C., & Diamond, L. (2018). Improved variant calling with deep neural networks. Nature Biotechnology, 36(5), 477-485. https://doi.org/10.1038/nbt.4235 DOI: https://doi.org/10.1038/nbt.4235

Shrikumar, A., Greenside, P., & Kundaje, A. (2017). Learning important features through propagating activation differences. Proceedings of the 34th International Conference on Machine Learning, 70, 3145-3153. https://proceedings.mlr.press/v70/shrikumar17a.html

Smith, J., & Robinson, T. (2020). AI and its impact on the future of DNA sequencing. Bioinformatics, 36(24), 5561-5573. https://doi.org/10.1093/bioinformatics/btaa1004 DOI: https://doi.org/10.1093/bioinformatics/btaa1004

Wang, Z., & Li, M. (2019). Deep learning in computational genomics. Briefings in Functional Genomics, 18(2), 166-176. https://doi.org/10.1093/bfgp/ely041 DOI: https://doi.org/10.1093/bfgp/ely041

Misra, N. R., Kumar, S., & Jain, A. (2021, February). A review on E-waste: Fostering the need for green electronics. In 2021 international conference on computing, communication, and intelligent systems (ICCCIS) (pp. 1032-1036). IEEE. DOI: https://doi.org/10.1109/ICCCIS51004.2021.9397191

Cherukuri, H., Goel, E. L., & Kushwaha, G. S. (2021). Monetizing financial data analytics: Best practice. International Journal of Computer Science and Publication (IJCSPub), 11(1), 76-87. https://rjpn.org/ijcspub/viewpaperforall.php?paper=IJCSP21A1011

“Building and Deploying Microservices on Azure: Techniques and Best Practices". (2021). International Journal of Novel Research and Development (www.ijnrd.org), 6(3), 34-49. http://www.ijnrd.org/papers/IJNRD2103005.pdf

• Mahimkar, E. S., "Predicting crime locations using big data analytics and Map-Reduce techniques", The International Journal of Engineering Research, Vol.8, Issue 4, pp.11-21, 2021. Available: https://tijer.org/tijer/viewpaperforall.php?paper=TIJER2104002

Chopra, E. P., "Creating live dashboards for data visualization: Flask vs. React", The International Journal of Engineering Research, Vol.8, Issue 9, pp.a1-a12, 2021. Available: https://tijer.org/tijer/papers/TIJER2109001.pdf

Venkata Ramanaiah Chinth, Om Goel, Dr. Lalit Kumar, "Optimization Techniques for 5G NR Networks: KPI Improvement", International Journal of Creative Research Thoughts (IJCRT), Vol.9, Issue 9, pp.d817-d833, September 2021. Available: http://www.ijcrt.org/papers/IJCRT2109425.pdf

Vishesh Narendra Pamadi, Dr. Priya Pandey, Om Goel, "Comparative Analysis of Optimization Techniques for Consistent Reads in Key-Value Stores", International Journal of Creative Research Thoughts (IJCRT), Vol.9, Issue 10, pp.d797-d813, October 2021. Available: http://www.ijcrt.org/papers/IJCRT2110459.pdf

Antara, E. F., Khan, S., Goel, O., "Automated monitoring and failover mechanisms in AWS: Benefits and implementation", International Journal of Computer Science and Programming, Vol.11, Issue 3, pp.44-54, 2021. Available: https://rjpn.org/ijcspub/viewpaperforall.php?paper=IJCSP21C1005

Pamadi, E. V. N., "Designing efficient algorithms for MapReduce: A simplified approach", TIJER, Vol.8, Issue 7, pp.23-37, 2021. Available: https://tijer.org/tijer/viewpaperforall.php?paper=TIJER2107003

Shreyas Mahimkar, Lagan Goel, Dr. Gauri Shanker Kushwaha, "Predictive Analysis of TV Program Viewership Using Random Forest Algorithms", International Journal of Research and Analytical Reviews (IJRAR), Vol.8, Issue 4, pp.309-322, October 2021. Available: http://www.ijrar.org/IJRAR21D2523.pdf

"Analysing TV Advertising Campaign Effectiveness with Lift and Attribution Models", International Journal of Emerging Technologies and Innovative Research (www.jetir.org), Vol.8, Issue 9, pp.e365-e381, September 2021. Available: http://www.jetir.org/papers/JETIR2109555.pdf

Mahimkar, E. V. R., "DevOps tools: 5G network deployment efficiency", The International Journal of Engineering Research, Vol.8, Issue 6, pp.11-23, 2021. Available: https://tijer.org/tijer/viewpaperforall.php?paper=TIJER2106003

2022

Kanchi, P., Goel, P., & Jain, A. (2022). SAP PS implementation and production support in retail industries: A comparative analysis. International Journal of Computer Science and Production, 12(2), 759-771. Retrieved from https://rjpn.org/ijcspub/viewpaperforall.php?paper=IJCSP22B1299

Rao, P. R., Goel, P., & Jain, A. (2022). Data management in the cloud: An in-depth look at Azure Cosmos DB. International Journal of Research and Analytical Reviews, 9(2), 656-671. http://www.ijrar.org/viewfull.php?&p_id=IJRAR22B3931

Kolli, R. K., Chhapola, A., & Kaushik, S. (2022). Arista 7280 switches: Performance in national data centers. The International Journal of Engineering Research, 9(7), TIJER2207014. https://tijer.org/tijer/papers/TIJER2207014.pdf

"Continuous Integration and Deployment: Utilizing Azure DevOps for Enhanced Efficiency", International Journal of Emerging Technologies and Innovative Research (www.jetir.org), ISSN:2349-5162, Vol.9, Issue 4, page no.i497-i517, April-2022, Available : http://www.jetir.org/papers/JETIR2204862.pdf

Shreyas Mahimkar, DR. PRIYA PANDEY, ER. OM GOEL, "Utilizing Machine Learning for Predictive Modelling of TV Viewership Trends", International Journal of Creative Research Thoughts (IJCRT), ISSN:2320-2882, Volume.10, Issue 7, pp.f407-f420, July 2022, Available at : http://www.ijcrt.org/papers/IJCRT2207721.pdf

Zhou, X., & Wang, Y. (2018). Ethical issues in AI-driven genomics: A critical review. Trends in Biotechnology, 36(1), 35-45. https://doi.org/10.1016/j.tibtech.2017.09.002 DOI: https://doi.org/10.1016/j.tibtech.2017.09.002

Viharika Bhimanapati, Akshun Chhapola, & Shalu Jain. (2023). Automation Strategies for Web and Mobile Applications in Media Domains. International Journal for Research Publication and Seminar, 14(5), 225–239. https://doi.org/10.36676/jrps.v14.i5.1479 DOI: https://doi.org/10.36676/jrps.v14.i5.1479

Aravind Sundeep, (Dr.) Punit Goel, & A Renuka. (2023). Evaluating Power Delivery and Thermal Management in High-Density PCB Designs. International Journal for Research Publication and Seminar, 14(5), 240–252. https://doi.org/10.36676/jrps.v14.i5.1480 DOI: https://doi.org/10.36676/jrps.v14.i5.1480

Sowmith Daram, Dr. Shakeb Khan, & Er. Om Goel. (2023). Network Functions in Cloud: Kubernetes Deployment Challenges. International Journal for Research Publication and Seminar, 14(2), 244–254. https://doi.org/10.36676/jrps.v14.i2.1481 DOI: https://doi.org/10.36676/jrps.v14.i2.1481

Dignesh Kumar Khatri, Prof.(Dr.) Punit Goel, & A Renuka. (2024). Optimizing SAP FICO Integration with Cross-Module Interfaces. International Journal for Research Publication and Seminar, 15(1), 188–201. https://doi.org/10.36676/jrps.v15.i1.1482 DOI: https://doi.org/10.36676/jrps.v15.i1.1482

Saketh Reddy Cheruku, Prof.(Dr.) Arpit Jain, & Er. Om Goel. (2024). Advanced Techniques in Data Transformation with DataStage and Talend. International Journal for Research Publication and Seminar, 15(1), 202–216. https://doi.org/10.36676/jrps.v15.i1.1483 DOI: https://doi.org/10.36676/jrps.v15.i1.1483

Gorrepati, N., & Tummala, S. R. (2024). A Case Report on Antiphospholipid Antibody Syndrome with Chronic Pulmonary Embolism Secondary to Deep Vein Thrombosis and Thrombocytopenia: Case report. Journal of Pharma Insights and Research, 2(2), 272-274.

Gorrepati, N., Quazi, F., Mohammed, PhD, A. S., & Avacharmal, R. (2024). Use of Nanorobots in Neuro chemotherapy diagnosis in human. International Journal of Global Innovations and Solutions (IJGIS). https://doi.org/10.21428/e90189c8.7a880e58 DOI: https://doi.org/10.21428/e90189c8.7a880e58

Quazi, F., Mohammed, PhD, A. S., & Gorrepati, N. (2024). Transforming Treatment and Diagnosis in Healthcare through AI. International Journal of Global Innovations and Solutions (IJGIS). https://doi.org/10.21428/e90189c8.072ffbe8 DOI: https://doi.org/10.21428/e90189c8.072ffbe8

Quazi, F., Khanna, A., nalluri, S., & Gorrepati, N. (2024). Data Security & Privacy in Healthcare. International Journal of Global Innovations and Solutions (IJGIS). https://doi.org/10.21428/e90189c8.4e2c586a DOI: https://doi.org/10.21428/e90189c8.4e2c586a

Hemanth Swamy. Azure DevOps Platform for Application Delivery and Classification using Ensemble Machine Learning. Authorea. July 15, 2024. DOI: https://doi.org/10.22541/au.172107338.89425605/v1 DOI: https://doi.org/10.22541/au.172107338.89425605/v1

Swamy, H. (2022). Software quality analysis in edge computing for distributed DevOps using ResNet model. International Journal of Science, Engineering and Technology, 9(2), 1-9. https://doi.org/10.61463/ijset.vol.9.issue2.193 DOI: https://doi.org/10.61463/ijset.vol.9.issue2.193

Swamy, H. (2024). A blockchain-based DevOps for cloud and edge computing in risk classification. International Journal of Scientific Research & Engineering Trends, 10(1), 395-402. https://doi.org/10.61137/ijsret.vol.10.issue1.180 DOI: https://doi.org/10.61137/ijsret.vol.10.issue1.180

Parameshwar Reddy Kothamali, Vinod Kumar Karne, & Sai Surya Mounika Dandyala. (2024). Integrating AI and Machine Learning in Quality Assurance for Automation Engineering. International Journal for Research Publication and Seminar, 15(3), 93–102. https://doi.org/10.36676/jrps.v15.i3.1445 DOI: https://doi.org/10.36676/jrps.v15.i3.1445

Bipin Gajbhiye, Anshika Aggarwal, & Shalu Jain. (2024). Automated Security Testing in DevOps Environments Using AI and ML. International Journal for Research Publication and Seminar, 15(2), 259–271. https://doi.org/10.36676/jrps.v15.i2.1472 DOI: https://doi.org/10.36676/jrps.v15.i2.1472

Kumar Kodyvaur Krishna Murthy, Pandi Kirupa Gopalakrishna Pandian, & Prof.(Dr.) Punit Goel,. (2024). The Role of Digital Innovation in Modernizing Railway Networks: Case Studies and Lessons Learned. International Journal for Research Publication and Seminar, 15(2), 272–285. https://doi.org/10.36676/jrps.v15.i2.1473 DOI: https://doi.org/10.36676/jrps.v15.i2.1473

Kumar, A. V., Joseph, A. K., Gokul, G. U. M. M. A. D. A. P. U., Alex, M. P., & Naveena, G. (2016). Clinical outcome of calcium, Vitamin D3 and physiotherapy in osteoporotic population in the Nilgiris district. Int J Pharm Pharm Sci, 8, 157-60.

UNSUPERVISED MACHINE LEARNING FOR FEEDBACK LOOP PROCESSING IN COGNITIVE DEVOPS SETTINGS. (2020). JOURNAL OF BASIC SCIENCE AND ENGINEERING, 17(1). https://yigkx.org.cn/index.php/jbse/article/view/225

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Published

28-08-2024

How to Cite

Aravind Ayyagiri, Anshika Aggarwal, & Shalu Jain. (2024). Enhancing DNA Sequencing Workflow with AI-Driven Analytics. International Journal for Research Publication and Seminar, 15(3), 203–216. https://doi.org/10.36676/jrps.v15.i3.1484

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